![]() I can pm you the pipeline, or I can also give you remote access to this instance if you’d like. How do you recommend looking at the database? I probably just messed up something on the pipeline generation because I am quite a new user. ![]() "Encountered unrecoverable error in NamesAndTypes during startup:Zero-length selections are not allowed" Then I tried to re-run it to get the exact details of the error and now I am getting this error: The pipeline was transferred across versions so I rebuilt the pipeline and then I got a different exporttodatabase error that talked about something being referenced before assignment. ValueError: Zero-length selections are not allowed My images are greyscale and that is appropriately selected in the names and type section.įile “cellprofiler\pipeline.pyc”, line 2094, in prepare_runįile “cellprofiler\modules\namesandtypes.pyc”, line 753, in prepare_runįile “cellprofiler\modules\namesandtypes.pyc”, line 1209, in create_imageset_dictionaryįile “cellprofiler\measurements.pyc”, line 361, in setitemįile “cellprofiler\measurements.pyc”, line 805, in add_measurementįile “cellprofiler\utilities\hdf5_dict.pyc”, line 486, in setitemįile “cellprofiler\utilities\hdf5_dict.pyc”, line 577, in setitemįile “cellprofiler\utilities\hdf5_dict.pyc”, line 54, in new_setitemįile “h5py\highlevel.pyc”, line 1265, in setitemįile “h5py\selections.pyc”, line 94, in selectįile “h5py\selections.pyc”, line 261, in getitemįile “h5py\selections.pyc”, line 512, in _handle_simpleįile “h5py\selections.pyc”, line 553, in _translate_slice Everything seems to work if I hit continue processing, but when I load the properties file in CPA the classifier only loads a fraction of the example cells properly. When converting, there is a popup window that has these instructions, but I am afraid this may all-too-often be overlooked. I am having a similar issues running v2.1 on a windows 10 AWS instance. If true, then you need to manually change this setting Select the image type in NamesAndTypes to grayscale.
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